Program

Overview timetable:


List of posters:

Monday
17 July 2023
  Arrival & Opening
14:00 Arrival and registration
14:30
15:00
15:30
16:00 Opening ceremonyChair: Tamas Korcsmaros
  Opening Keynote lecture: Jasmin Fisher (University College London, UK): Executable signalling networks: From mechanisms to therapeutic applications
16:30
 
17:00 Opening Keynote lecture: Nick Powell (Imperial College London, UK): Harnessing cytokine-responsive transcriptomics to predict patient trajectories in inflammatory bowel disease
 
17:30
  Welcome coctail and dinner 
18:00
 
18:30
 
19:00
 
19:30
 
20:00
 
20:30 Informal evening program (bowling, table soccer, swimming, etc)
 
21:00
 
21:30
 
22:00
 
22:30
 
Tuesday
18 July 2023
  Disease models and organoidsChair: Diána Papp
9:00 Keynote lecture: Eduardo Villablanca (Karolinska Institutet, SE): Spatial cell profiling of the whole gastrointestinal tract during intestinal inflammation
 
9:45 Expert talk 1: Joana F. Neves (King's College London, UK): Mucosal organoids reveal innate lymphoid cells' functions
 
10:15 Expert talk 2: Kristine Schauer (Gustave Roussy Institut, FR): Towards a high resolution map of the cancer cell: focus on lysosome dysfunction
 
10:45 Tea/Coffee
 
  Disease models and organoidsChair: Jasmin Fisher
11:15 Expert talk 3: Julio Saez-Rodriguez (University of Heidelberg, DE): Knowledge-based machine learning to extract disease mechanisms from multi-omics data
 
11:45 Amisha Modasia (Quadram Institute, UK): Assessing the effects of dietary fibre fermentation in an in vitro model of the intestinal epithelium
Andrea Checcoli (INSERM, FR): The immunogenic cell death (ICD) is a type of cell death that elicits an anticancer immune response
Nadezhda Doncheva (University of Copenhagen, DK): Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks
12:30 Lunch
 
13:00
 
13:30
 
14:00 Teamwork – part 1 Getting know each other 
 
14:30 Presenting the problem to be solved 
 
15:00
 
15:30
 
16:00 Medieval team building competition, informal discussions in the meantime 
 
16:30
 
17:00
 
17:30 Special Renaissance Dinner
 
18:00
 
18:30
 
19:00
 
19:30 Double Sunset Cruise
 
20:00
 
20:30
   
21:00  
   
21:30 Poster session 1
IBD - Chairs: Federica Ungaro, Julio Saez-Rodriguez
Balázs BohárSystems genomics analysis on gene regulatory networks in inflammatory bowel disease
Margita Ágnes MártonA systems biological study of the role of endoplasmic stress upon inflammatory bowel disease
Dezső MódosSystems Genomics and Network Approaches Uncover How Single Nucleotide Polymorphisms in Crohn’s Disease and Ulcerative Colitis Affect Common Processes Through Different Mechanisms
Francisca CastilloCharacterization of a novel molecular stratification of Ulcerative Colitis patients
Polina KornilovaParalog proteins play a crucial role in rewiring cell-type specific signalling processes in Ulcerative Colitis and Crohn’s disease
Viera KovacovaUnveiling the Hidden Potential of Unmapped Reads in Transcriptomic Analyses: Implications for IBD
John ThomasConserved sex differences in intestinal adaptive immunity are present in the healthy and Crohn’s disease ileum which are underpinned by sexually dimorphic transcriptional regulation
Disease modelling and networks - Chairs: Nadezhda Doncheva, Joana F. Neves
Veronica VenafraSignaling profiler, a computational strategy to produce actionable and context-specific networks of intracellular signaling
Matthieu NajmA systems biology approach for Cystic Fibrosis
Isabelle HautefortWhy do we need in vitro co-culture systems?
Gustavo MonasterioSpatially resolved proteogenomic atlas of the upper gastrointestinal tract
Marton OlbeiCytokine Networks in Immune Mediated Inflammatory Diseases
Dénes TüreiOmniPath: database knowledge for mechanistic modeling, cell-cell communication and more
 
22:00
 
22:30 Informal evening program
 
Wednesday
19 July 2023
  Microbiome and host-microbe analysesChair: Isabelle Hautefort
9:00 Keynote lecture: Jost Enninga (Institut Pasteur, FR): Imaging the modulation of host trafficking and signaling by bacterial effector proteins
 
9:45 Expert talk 1: Paul Wilmes (University of Luxembourg, LU): Systems ecology of human-microbiome interactions
 
10:15 Expert talk 2: Cynthia Whitchurch (Quadram Institute, UK): Challenges in imaging microbiomes and biofilms on host tissues
 
10:45 Tea/Coffee
 
  Microbiome and host-microbe analysesChair: Laura Nolan
11:15 Expert talk 3: Falk Hildebrand (Quadram Institute, UK): Gut Metagenomics: finding good descriptors of bacterial communities and their members
 
11:45 Federica Ungaro (Università Vita-Salute San Raffaele, IT): Not just a bystander: may the microbiota be the leading actor in gut diseases?
Douglas Brubaker (Case Western Reserve University School of Medicine, US): Pharmacobiome: Realizing the Therapeutic Potential of Microbes and Microbial Products
László Mérő (Turbine.Ai, HU): Can we overcome bias in machine learning models predicting drug sensitivity and gene essentiality?
12:30 Lunch
 
13:00
 
13:30
 
14:00 Teamwork – part 2 Discussing the problem to be solved
 
14:30
 
15:00
 
15:30
 
16:00 Tea/Coffee
 
16:30 Catamaran race on the Danube, informal discussion in the meantime
 
17:00
 
17:30
 
18:00
 
18:30
 
19:00 BBQ Picnic Dinner in the Garden of the Hotel Visegrád
 
19:30
 
20:00
 
20:30
 
21:00
 
21:30 Poster session 2
Microbiome - Chairs: Paul Wilmes, Jost Enninga
Carmela ErricoThe Caudovirales Class of Viruses is Associated with Dendritic Cell Impairment in CD Patients
Joachim Fritscher(in) no time to strain: strain-resolved metagenomic profiling with protal
Laura NolanTowards a comprehensive understanding of polymicrobial biofilm development and community interactions
Lejla Potari-GulDevelopment of a host-microbe interaction pipeline to reveal the cell- and condition-specific effects of bacteria using single-cell transcriptomics data
Cancer - Chairs: Kristine Schauer, Chris Tape
Stefania CaglianiThe role of mfsd2a in the resolution of colorectal cancer-promoting inflammation: implications for innovative therapies
Norbert DeutschDisCanVis: Visualizing integrated structural and functional annotations to better understand the effect of cancer mutations located within disordered proteins
Dávid KeresztesInvestigation of the role of COP9 signalosome in the epithelial-mesenchymal transition
Marco RusconeMultiscale Model of the Different Modes of Cancer Cell Invasion
Amanda FacoettiInvestigating the role of gut eukaryotic virome in contributing to colorectal cancer carcinogenesis
Autophagy and modelling - Chairs: Livia Perfetto, Bence Szalai
Valentina MadárHow yeast go multicellular
Yuseok MoonIntegrated stress response facilitates mucoprotective reprogramming against acute renointestinal distress
Luca CsabaiAutophagyNet: High-resolution data source for the analysis of autophagy and its regulation
Bence HajdúA systems biological study of oscillatory characteristic of autophagy induction under cellular stress
Márk KerestélyReversal of epithelial-msenchymal transition in a compartmentalized in silico boolean model
 
22:00
 
22:30 Informal evening program
 
Thursday
20 July 2023
  Modeling and Precision MedicineChair: Dezső Módos
9:00 Keynote lecture: Chris Tape (University College London, UK): Single-cell Signalling Analysis of Tumour Microenvironment Organoids
 
9:45 Expert talk 1: Fabian Fröhlich (Crick Institute, UK): Anti-Cancer Drug Sensitivity Prediction using Mathematical Models of Signalling Pathways
 
10:15 Expert talk 2: Laurence Calzone (Institute Curie, FR): Simulating dynamic populations of cell types in cancer: from data to predictive models.
 
10:45 Tea/Coffee
 
  Modeling and Precision MedicineChair: Fabian Fröhlich
11:15 Livia Perfetto (University of Rome La Sapienza, IT): A computational strategy to produce actionable and patient-specific networks of intracellular signaling in Pancreatic Ductal Adenocarcinoma
Avlant Nilsson (Massachusetts Institute of Technology, US): A deep learning model of intracellular networks
Orsolya Kapuy (Semmelweis University, HU): A systems biological study of ATF4-controlled autophagy induction in inflammatory bowel disease
12:00 Closing Talk: Tamas Korcsmaros (Imperial College London, UK): Patient- and cell-type specific networks to explain heterogeneity in IBD
12:30 Lunch
 
13:00
 
13:30
 
14:00 Presentations of teams (15 min / team + discussion)
 
14:30
 
15:00
 
15:30
 
16:00 Tea/Coffee
 
16:30 Moderated panel discussion on: team presentations,novel ideas, and concrete actions (e.g. collaborations)
 
17:00 Moderated panel discussion on: Women / Family in Science
 
17:30
  Award presentation for teams and poster presenters and Closing remarks
18:00
  Walk and free time in the Court of Crafts
18:30
 
19:00 Workshop Closing Feast in the Court of Foods
 
19:30
 
20:00
 
20:30
 
21:00
 
21:30
 
22:00 Informal evening program with music
 
22:30
 
Friday
21 July 2023
Departure